75 years ago, universities were cautious about accepting Federal funds due to this specific possibility. It worked out. Not it isn't.
Federal funds comes with strings attached and administrations change. If the usefulness of the work has proven itself now, then other sources can fund it. This won't really be controversial or require grandstanding or debate soon, because it will be the status quo.
Yes, its also disruptive to many programs to cut off funding in this way. I think decoupling is for the better. This university daytraded tax free up to a $50bn endowment, for a rainy day. They just need to get liquid and plug the budget gap, which they are starting to do. Donors and other sources can be leveraged too.